Calbindin 1


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Calbindin 1 is a protein that in humans is encoded by the CALB1 gene. It belongs to the calbindin family of calcium-binding proteins, along with calretinin (CALB2). [5]

CALB1
Identifiers
AliasesCALB1, CALB, D-28K, calbindin 1
External IDsOMIM: 114050; MGI: 88248; HomoloGene: 21026; GeneCards: CALB1; OMA:CALB1 - orthologs
Gene location (Human)
Chromosome 8 (human)
Chr.Chromosome 8 (human)[1]

Chromosome 8 (human)

Genomic location for CALB1

Genomic location for CALB1

Band8q21.3Start90,058,608 bp[1]
End90,095,475 bp[1]
Gene location (Mouse)
Chromosome 4 (mouse)
Chr.Chromosome 4 (mouse)[2]

Chromosome 4 (mouse)

Genomic location for CALB1

Genomic location for CALB1

Band4 A2|4 6.66 cMStart15,881,264 bp[2]
End15,908,064 bp[2]
RNA expression pattern
Bgee
HumanMouse (ortholog)
Top expressed in
  • kidney tubule

  • cerebellar vermis

  • nucleus accumbens

  • glomerulus

  • metanephric glomerulus

  • caudate nucleus

  • human kidney

  • right hemisphere of cerebellum

  • renal medulla

  • lateral nuclear group of thalamus
Top expressed in
  • molar

  • cerebellar vermis

  • lobe of cerebellum

  • ventromedial nucleus

  • mammillary body

  • medial dorsal nucleus

  • paraventricular nucleus of hypothalamus

  • medial geniculate nucleus

  • anterior amygdaloid area

  • arcuate nucleus
More reference expression data
BioGPS
n/a
Gene ontology
Molecular function
Cellular component
Biological process
Sources:Amigo / QuickGO
Orthologs
SpeciesHumanMouse
Entrez

793

12307

Ensembl

ENSG00000104327

ENSMUSG00000028222

UniProt

P05937

P12658

RefSeq (mRNA)

NM_004929
NM_001366795

NM_009788

RefSeq (protein)

NP_004920
NP_001353724

NP_033918

Location (UCSC)Chr 8: 90.06 – 90.1 MbChr 4: 15.88 – 15.91 Mb
PubMed search[3][4]
Wikidata
View/Edit HumanView/Edit Mouse

The protein encoded by this gene is a member of the calcium-binding protein superfamily that includes calmodulin and troponin C. Originally described as a 27 kDa protein, it is now known to be a 28 kDa protein. It contains four active calcium-binding domains, and has two modified domains that are thought to have lost their calcium binding capability.[6] This protein is thought to buffer entry of calcium upon stimulation of glutamate receptors. Depletion of this protein was noted in patients with Huntington disease. [provided by RefSeq, Jan 2015].

  1. ^ a b c GRCh38: Ensembl release 89: ENSG00000104327Ensembl, May 2017
  2. ^ a b c GRCm38: Ensembl release 89: ENSMUSG00000028222Ensembl, May 2017
  3. ^ "Human PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  4. ^ "Mouse PubMed Reference:". National Center for Biotechnology Information, U.S. National Library of Medicine.
  5. ^ "Entrez Gene: Calbindin 1". Retrieved 2018-10-04.
  6. ^ Noble JW, Almalki R, Roe SM, Wagner A, Duman R, Atack JR (October 2018). "The X-ray structure of human calbindin-D28K: an improved model". Acta Crystallographica Section D. 74 (Pt 10): 1008–1014. Bibcode:2018AcCrD..74.1008N. doi:10.1107/s2059798318011610. PMC 6173056. PMID 30289411.

This article incorporates text from the United States National Library of Medicine, which is in the public domain.